[Bioperl-l] make test errors

[Jason Stajich]

RestrictionIO.t still fails on perl 5.6.0 and darwin.  I'm not sure if 
this a broken perl on OSX problem or 5.6.0 bug.  If anyone has 5.6.0 on 
a linux system would be nice to know if the test still fails.

We need to either put a workaround in the test or figure out why the 
parser isn't getting everything it is supposed to get (failing on test 
9 the withrefm.pm parser).

-jason
On Nov 19, 2004, at 9:51 AM, Jason Stajich wrote:

>
> On Nov 18, 2004, at 6:43 PM, Allen Day wrote:
>
>> FAILED:
>> -------
>> t/LiveSeq.t                    48    1   2.08%  19
>> t/SeqFeature.t      9  2304   192    0   0.00%  ??
>> t/Unflattener.t     9  2304     6    4  66.67%  5-6
>> t/Unflattener2.t               11    2  18.18%  7 10
>> t/hmmer.t                     136   16  11.76%  8 13 30 33-40 137-141
>> -------
>>
>> i'm also getting *a lot* of "isn't numeric warning messages that look 
>> like
>> this:
>>
>> Argument ">81297" isn't numeric in numeric gt (>) at 
>> .../bioperl-live/blib/lib/Bio/Factory/FTLocationFactory.pm line 217, 
>> <GEN3> line 860.
>>
> this is fixed now. my bad.
>
> Can't reproduce any of the failed tests with CVS live now.
>
>> [15:41]aday at asti:~/cvsroot/bioperl-live> uname -a
>> Linux asti.ev.affymetrix.com 2.6.8-1.521 #1 Mon Aug 16 09:01:18 EDT 
>> 2004 i686 i686 i386 GNU/Linux
>> [15:42]aday at asti:~/cvsroot/bioperl-live> perl -v
>>
>> This is perl, v5.6.1 built for i686-linux
>> ...
>>
>> -Allen
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>>
>>
> --
> Jason Stajich
> jason.stajich at duke.edu
> http://www.duke.edu/~jes12/
>
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>
--
Jason Stajich
jason.stajich at duke.edu
http://www.duke.edu/~jes12/