[Bioperl-l] remote blast DESCRIPTIONS

[Madeleine Lemieux]

Karolina,

I also believe that the key/value pair DESCRIPTIONS => 1000 goes more 
appropriately in the %RETRIEVALHEADER hash, not %HEADER. So in Perl.pm 
you would
write
	$Bio::Tools::Run::RemoteBlast::RETRIEVALHEADER{'DESCRIPTIONS'} = 1000;

Cheers,
Madeleine

> Karolina,
>
> You also have to add the following key/value pair to %HEADER in 
> RemoteBlast.pm:
> 	HITLIST_SIZE => 1000
>
> or add the following line to Perl.pm:
> 	Bio::Tools::Run::RemoteBlast::HEADER{'HITLIST_SIZE'} = 1000;
>
> See http://www.ncbi.nlm.nih.gov/BLAST/Doc/node3.html for a list of 
> BLAST Put and Get command options.
>
> Regards,
> Madeleine
>
>> Hi,
>>
>> I would like to change the number of descriptions I get in my blast 
>> report from
>> default 100 to 1000. I tried with adding a header
>>
>> $Bio::Tools::Run::RemoteBlast::HEADER{'DESCRIPTIONS'} = 1000;
>>
>>  and I even changed the value in RemoteBlast.pm module itself and 
>> still no change.
>>
>> -Karolina