[Bioperl-l] Question - Bio::Index::NCBI ??

[William S. Morgart]

A long time ago I did a Bio::Index::Washu version for which I was
unable to get permission from "The Powers That Be" but they have now
been changed so the political climate is (hopefully) better. The NCBI
version should be very similar so I'll take a look at it and will
hopefully get permission this time around to release both ...

Bill

>>>>> "Jason" == Jason Stajich <jason at cgt.duhs.duke.edu> writes:

Jason> A long time ago someone volunteered to port some code that has
Jason> been written in perl for this - but it has never been realized
Jason> AFAIK.

Jason> -jason On Wed, 26 May 2004, Brian Osborne wrote:

>> Bill,
>> 
>> I don't think so, you're probably thinking of Bio::Index::Fasta.
>> 
>> Brian O.
>> 
>> -----Original Message----- From:
>> bioperl-l-bounces at portal.open-bio.org
>> [mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of William
>> S.  Morgart Sent: Wednesday, May 26, 2004 11:14 AM To:
>> bioperl-l at portal.open-bio.org Subject: [Bioperl-l] Question -
>> Bio::Index::NCBI ??
>> 
>> 
>> Wasn't there a BioPerl object that allowed one to randomly access
>> an NCBI formatted and indexed fasta file that went by the name
>> Bio::Index::NCBI?
>> 
>> Bill Morgart wsm10826 at mh.us.sbphrd.com
>> 
>> 
>> _______________________________________________ Bioperl-l mailing
>> list Bioperl-l at portal.open-bio.org
>> http://portal.open-bio.org/mailman/listinfo/bioperl-l
>> 
>> 
>> _______________________________________________ Bioperl-l mailing
>> list Bioperl-l at portal.open-bio.org
>> http://portal.open-bio.org/mailman/listinfo/bioperl-l
>> 

Jason> -- Jason Stajich Duke University jason at cgt.mc.duke.edu