[Fwd: Re: [Bioperl-l] aligning one sequence o a preformed alignment]

[Barry Moore]

Luisa-

Must have replied only to you since I did see this show up on the list, 
so I'll repost it.

ClustalW will do this.  Bio::Tools::Run::Alignment::Clustalw if you've 
got a local installation.  Bio::Tools::Run::PiseApplication::clustalw to 
run it on the Pise server.

Barry

luisa pugliese wrote:

> Hi Bioperlers,
> I would like to align a sequence to an alignment I already have, without
> changing the alignment between the other sequences involved in it. Does
> anybody knows if there is a module within bioperl or a program that can be
> run by bioperl-run that could do this job?
> Thank you to all
> Luisa
> =============================
> Luisa Pugliese, Ph.D.
> luisa.pugliese at safan-bioinformatics.it
> S.A.F.AN. BIOINFORMATICS
> Corso Tazzoli 215/13 -10137 Torino - ITALY
> tel +39 011 3026230
> cell. +39 333 6130644
>
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
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-- 
Barry Moore
Dept. of Human Genetics
University of Utah
Salt Lake City, UT



-- 
Barry Moore
Dept. of Human Genetics
University of Utah
Salt Lake City, UT