[Bioperl-l] hash key for SeqFeatureI
Chris Dwan (CCGB)
cdwan at mail.ahc.umn.edu
Thu Mar 25 10:25:52 EST 2004
> And related to this, where is the strandedness of Bioperl SeqFeatures
> stored?
Bio::SeqFeature::Generic has a member "location" which is a
Bio::Location::Simple. Bio::Location::Simple inherits the strand method
from Bio::Location::Atomic.
Really, under the hood, it's:
seqfeature->location()->{'_strand')}
Which may be accessed as
seqfeature->strand()
Allowed values are -1 (or '-'), 1 (or '+') and 0 (or '.').
-Chris Dwan
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