[Bioperl-l] How to extract intron's exon sequences?

[Jason Stajich]

Really depends on the data you are working with.

Where are your annotations coming from.  What Species?  Ensembl has made
this easy to do for species in the ensembl system.

You can also write code to do this based on annotated sequence records
using Bio::SeqIO to parse and manipulating sequences and their
annotations.

See the Feature-Annotation HOWTO on the bioperl HOWTO page for some more
examples.

-jason

On Mon, 22 Mar 2004, [gb2312] ÖÜ Óî wrote:

> Hi, everyone,
>
> Is there any module to esaily extract intron's upstream and downstream exon
> sequences? Thanks.
>
>
> Yu Zhou
>
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu