[Bioperl-l] Clustal/T-Coffee to Fasta

[Brian Osborne]

Alberto,

You want to use AlignIO, and 'fasta' is one of its output formats. Unlike
SeqIO, AlignIO can't produce output in all of its input formats. Take a look
at the bptutorial, section III.2.2
(http://bioperl.org/Core/Latest/bptutorial.html).


Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of Alberto M R
Davila
Sent: Wednesday, March 17, 2004 2:52 PM
To: bioperl-l at bioperl.org
Cc: amrdavila at yahoo.com
Subject: [Bioperl-l] Clustal/T-Coffee to Fasta

I was looking in to the SeqIO module trying to know if it could convert
multiple alignments done with ClustalW/X (*.aln files) or T-Coffee to
Fasta sequences into a single file... no luck... there would be any other
Bioperl module to do that format conversion ?

Thanks, Alberto



__________________________________
Do you Yahoo!?
Yahoo! Mail - More reliable, more storage, less spam
http://mail.yahoo.com
_______________________________________________
Bioperl-l mailing list
Bioperl-l at portal.open-bio.org
http://portal.open-bio.org/mailman/listinfo/bioperl-l