[Bioperl-l] Clustal/T-Coffee to Fasta

[Jason Stajich]

Alignments are handled by Bio::AlignIO

You want
 Bio::AlignIO::clustalw
 Bio::AlignIO::fasta

-j
On Wed, 17 Mar 2004, Alberto M R Davila wrote:

> I was looking in to the SeqIO module trying to know if it could convert
> multiple alignments done with ClustalW/X (*.aln files) or T-Coffee to
> Fasta sequences into a single file... no luck... there would be any other
> Bioperl module to do that format conversion ?
>
> Thanks, Alberto
>
>
>
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu