[Bioperl-l] phd 2 abi file

[Michael Cipriano]

Thank you, I will look into those solutions.

Michael Cipriano (mcipriano at mbl.edu)
Research Assistant I, Global Infectious Diseases
Josephine Bay Paul Center, Marine Biological Laboratory
7 MBL Street, Woods Hole, MA 02543-1015


> -----Original Message-----
> From: Stefan Weckx [mailto:stefan.weckx at ua.ac.be]
> Sent: Monday, March 08, 2004 5:27 PM
> To: Michael Cipriano
> Cc: bioperl-l at bioperl.org
> Subject: Re: [Bioperl-l] phd 2 abi file
> 
> Michael,
> 
> have look at http://bioperl.org/pipermail/bioperl-l/2001-
> August/006176.html,
> You can also try this: translate your phd file to a fasta using
phd2fasta,
> then run mktrace. This will create an scf file. mktrace comes with
Consed
> (http://www.phrap.org/consed/distributions/README.13.0.txt).
> other possibility: try "sudophred" which comes with the newest release
of
> PolyPhred (see at http://droog.mbt.washington.edu/poly_doc.html).
> 
> Stefan
> 
> --
>  Stefan Weckx
> Bioinformatics Unit
> Department of Molecular Genetics VIB8
> University of Antwerp
> Belgium
> 
> ----- Original Message -----
> From: "Michael Cipriano" <mcipriano at mbl.edu>
> To: <bioperl-l at bioperl.org>
> Sent: Monday, March 08, 2004 8:48 PM
> Subject: [Bioperl-l] phd 2 abi file
> 
> 
> > Is there a way to create an abi sequence file(abi, ab1) from a phred
> > (phd) file within bioperl? If not within bioperl, does anyone know
of
> > any way to do this?
> >
> > Thanks in advance
> >
> > Michael Cipriano (mcipriano at mbl.edu)
> > Research Assistant I, Global Infectious Diseases
> > Josephine Bay Paul Center, Marine Biological Laboratory
> > 7 MBL Street, Woods Hole, MA 02543-1015
> >
> >
> >
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> >
>