[Bioperl-l] phd 2 abi file

Stefan Weckx stefan.weckx at ua.ac.be
Mon Mar 8 17:26:56 EST 2004


have look at http://bioperl.org/pipermail/bioperl-l/2001-August/006176.html,
You can also try this: translate your phd file to a fasta using phd2fasta,
then run mktrace. This will create an scf file. mktrace comes with Consed
other possibility: try "sudophred" which comes with the newest release of
PolyPhred (see at http://droog.mbt.washington.edu/poly_doc.html).


 Stefan Weckx
Bioinformatics Unit
Department of Molecular Genetics VIB8
University of Antwerp

----- Original Message ----- 
From: "Michael Cipriano" <mcipriano at mbl.edu>
To: <bioperl-l at bioperl.org>
Sent: Monday, March 08, 2004 8:48 PM
Subject: [Bioperl-l] phd 2 abi file

> Is there a way to create an abi sequence file(abi, ab1) from a phred
> (phd) file within bioperl? If not within bioperl, does anyone know of
> any way to do this?
> Thanks in advance
> Michael Cipriano (mcipriano at mbl.edu)
> Research Assistant I, Global Infectious Diseases
> Josephine Bay Paul Center, Marine Biological Laboratory
> 7 MBL Street, Woods Hole, MA 02543-1015
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l

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