[Bioperl-l] CpG frequency

[richard sucgang phd]

Gyrogy,

If this is your main goal, then I think bioperl may be a little 
overkill. Have you considered the EMBOSS suite? http://www.emboss.org
Particularly, the cpgreport tool

http://www.rfcgr.mrc.ac.uk/Software/EMBOSS/Apps/cpgreport.html

-r

At 6:07 PM +0100 3/5/04, Gyoergy Abrusan wrote:

>Dear All,
>
>I am a biologiist with quite "moderate" knowledge in bioinformatics. 
>I would like to ask whether a script for estimating CpG frequencies 
>(no. of CG pairs/no. of nucleotides) in files containing several DNA 
>sequences (fasta format) exist in the bioperl database.
-- 
Richard Sucgang, PhD
(713) 798 7657
Dictyostelium Genome Sequencing Project @ BCM
http://www.dictygenome.org/