[Bioperl-l] CpG frequency

richard sucgang phd rsucgang at bcm.tmc.edu
Fri Mar 5 12:10:31 EST 2004


If this is your main goal, then I think bioperl may be a little 
overkill. Have you considered the EMBOSS suite? http://www.emboss.org
Particularly, the cpgreport tool



At 6:07 PM +0100 3/5/04, Gyoergy Abrusan wrote:

>Dear All,
>I am a biologiist with quite "moderate" knowledge in bioinformatics. 
>I would like to ask whether a script for estimating CpG frequencies 
>(no. of CG pairs/no. of nucleotides) in files containing several DNA 
>sequences (fasta format) exist in the bioperl database.
Richard Sucgang, PhD
(713) 798 7657
Dictyostelium Genome Sequencing Project @ BCM

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