[Bioperl-l] genbank to gff and vice versa

[Marc Logghe]

> Is the reverse flow possible?
> 
Only if you have your (fasta) sequence sitting somewhere you can turn a GFF line into a feature and add it.
my $seq = $fasta->next_seq;
my @feat;
while (<GFF>)
{
  chomp;
  next if /^$/;
  puch @feat, Bio::SeqFeature::Generic->new( -gff_string => $_ );
}
$seq->add_SeqFeature(@feat);

or something alike.

HTH,
Marc




***********************************************************
Marc Logghe, Ph.D.
Senior Scientist
Scientific Computing Group
Devgen nv
Technologiepark 9
B - 9052 Ghent-Zwijnaarde
Belgium
Tel: +32 9 324 24 88
Fax: +32 9 324 24 25

> **** DISCLAIMER ********************************************************** 
> "This e-mail and any attachments thereto may contain information 
> which is confidential and/or protected by intellectual property 
> rights and are intended for the sole use of the recipient(s) named above. 
> Any use of the information contained herein (including, but not limited to, 
> total or partial reproduction, communication or distribution in any form) 
> by persons other than the designated recipient(s) is prohibited. 
> If you have received this e-mail in error, please notify the sender either 
> by telephone or by e-mail and delete the material from any computer. 
> Thank you for your cooperation."