[Bioperl-l] RE: EST Clustering software

[Tristan Fiedler]

Message: 2
Date: Fri, 18 Jun 2004 11:39:49 -0400
From: Scott Cain <cain at cshl.org>
Subject: [Bioperl-l] EST clustering software
To: Bioperl list <bioperl-l at portal.open-bio.org>
open source EST software widely used :

cap3
phrap

both are quite good.

Tristan Fiedler


--------------------------------------------------------------
Scott Cain wrote:

Hello all,

I am looking for free and/or open source software for doing EST
clustering.  I am aware of StackPack and TGI Clustering tools from
TIGR.  Are there others I should know about?

Thanks,
Scott

-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                         cain at cshl.org
GMOD Coordinator (http://www.gmod.org/)                     216-392-3087
Cold Spring Harbor Laboratory






-- 
Tristan J. Fiedler, Ph.D.
Postdoctoral Research Fellow - Walsh Laboratory
NIEHS Marine & Freshwater Biomedical Sciences Center
Rosenstiel School of Marine & Atmospheric Sciences
University of Miami

tfiedler at rsmas.miami.edu
t.fiedler at umiami.edu (alias)
305-361-4626