[Bioperl-l] genbank to gff and vice versa

[Sucheta Tripathy]

Is the reverse flow possible?

from gff to genbank ?

Thanks

Sucheta

At 01:24 AM 6/21/2004 -0400, Jason Stajich wrote:
>We take each feature from a genbank file and write it to a
>GFF writer (which takes features as input).
>
>my $out = Bio::Tools::GFF->new(-gff_version => 2);
>for my $feature ( $seq->get_SeqFeatures ) {
>   $out->write_feature($feature);
>}
>
>We don't have a Gff.pm module - we have a GFF.pm which is
>properly called Bio::Tools::GFF and is in Bio/Tools/GFF.pm.
>
>-jason
>On Sun, 20 Jun 2004, Sucheta Tripathy wrote:
>
> > Hello,
> >
> > I was wondering which module most effectively does the conversion of
> > genbank to gff and vice versa.
> >   I downloaded a script which needs Gff.pm, and whan I wanted to install it
> > with CPAN it could not locate. SO I downloaded the Gff.pm from some other
> > source, but it does not seem to do the job.
> >
> > Any suggestions.
> >
> > _______________________________________________
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> > Bioperl-l at portal.open-bio.org
> > http://portal.open-bio.org/mailman/listinfo/bioperl-l
> >
>
>--
>Jason Stajich
>Duke University
>jason at cgt.mc.duke.edu