[Bioperl-l] new sourforge project using bioperl: RFLP planner

[Felipe Wettstein]

Hi,

I wrote a program that helps to plan RFLP experiments:

It finds restriction enzymes that cut a set of homologue DNA sequences 
in different ways and simulates the resulting gel- electrophoresis 
image. The program helps you to find the crucial restriction enzymes 
that characterize the population. With the electrophoresis simulation 
it is easy to chose the restriction enzymes that show the best 
polymorphism on the gel.
The program is written in perl, uses some modules of bioperl and the 
GD-Library. The program should be platform independet, but is tested 
only on Mac OS X, perl 5.8.0, bioperl 1.2.3.

Any comments are welcome, even those telling me where I should have 
anounced this project.

project web site:
http://restrifind.sourceforge.net/

sourceforge web site:
http://sourceforge.net/projects/restrifind/

Used modules
Alignement and restriction

Bio::SeqIO
Bio::AlignIO
Bio::Align::AlignI
Bio::Tools::Run::Alignment::Clustalw
Bio::Tools::RestrictionEnzyme

Gel drawing
GD
Bio::Seq
Bio::Tools::Gel

Colored printout
Term::ANSIColor #only for output a red nucleotide in cli, obsolete:)


felipe wettstein