[Bioperl-l] msf output
Wes Barris
wes.barris at csiro.au
Tue Feb 17 20:56:04 EST 2004
Hi,
Msf files produced by StackPACK have coordinates listed above each
group of sequence data. Bioperl msf files do not have this. I have
tested a one-line addition that would fix this:
Bio/AlignIO/msf.pm:
while( $count < $length ) {
# there is another block to go!
+ $self->_print (sprintf("%22s%-27d%27d\n",' ',$count+1,$count+50));
foreach $name ( @arr ) {
$self->_print (sprintf("%-20s ",$name));
If there is a more formal way of submitting suggestions, please let
me know.
--
Wes Barris
E-Mail: Wes.Barris at csiro.au
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