[Bioperl-l] Fasta Genome Splice

[Jason Stajich]

You want these as a fasta file per orf and per non-orf region or just 2
datasets with the genome masked (all N's or lowercased)?

-jason
On Thu, 12 Feb 2004, David Clark wrote:

> Hello,
>
> I'm a relative newcomer to bioperl, and would like a point in the right
> direction.  I need to separate the yeast genome into two partial
> genomes--one with all ORF's, and one with everything else.  I have a
> tab delimited list of the ORF's with the coordinates, and can probably
> parse that myself, but I wanted to see if anyone could point me to some
> example code, or give me some place to start in separating genomes
> based on the coordinates.
>
> Thanks,
>
> David Clark
> dfclark at neo.tamu.edu
>
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu