[Bioperl-l] ppm of bioperl release candidate
Scott Cain
cain at cshl.org
Tue Dec 21 00:09:56 EST 2004
Thanks Nathan,
I did as Lincoln suggested and just tarred up the blib directory. The
ppd file I already had will serve, as for me at least, I just need the
prerequisites that are needed for gbrowse--trying to do more is beyond
what I want for right now.
Thanks,
Scott
On Tue, 2004-12-21 at 01:21 +0000, Nathan Haigh wrote:
> I have been working on making a ppd file for the upcoming 1.5 bioperl release as well as a bioperl-run ppd and associated tar.gz
> files. In these ppd files I have tried to include as many of the bioperl dependencies I could find so that the user will only need
> to install the bioperl ppd via PPM (if the user needs to use PPm, chances are, they'll want everything installed so they don't have
> the hassle of wondering why things don't work at a later date); without this the user my have limited bioperl functionality due to
> missing dependencies (or other modules that are required for extended functionality).
>
> I can let you have the ppd file, then all you need to do is generate the tar.gz file from the blib dir as Lincoln suggested, and
> modify the ppm file so it points to the tar.gz file.
>
> Nathan
>
> > -----Original Message-----
> > From: bioperl-l-bounces at portal.open-bio.org [mailto:bioperl-l-bounces at portal.open-bio.org] On Behalf Of Scott Cain
> > Sent: 20 December 2004 20:07
> > To: Lincoln Stein; Aaron J. Mackey
> > Cc: Bioperl list
> > Subject: [Bioperl-l] ppm of bioperl release candidate
> >
> > Hi Lincoln and Aaron,
> >
> > Before I announce the release of the ppm version of GBrowse, I really
> > should have a ppm version of bioperl. In the past, we've hosted
> > "unofficial" ppm builds of bioperl at www.gmod.org/ggb/ppm (the same
> > place as the gbrowse ppm), though to the best of my recollection, I've
> > never done the build myself. Is there any reason I wouldn't be able to
> > do a 'make ppd' in bioperl-live and get something useful? Or is there a
> > ppm build of the current release candidate already available?
> >
> > Thanks,
> > Scott
> >
> > --
> > ------------------------------------------------------------------------
> > Scott Cain, Ph. D. cain at cshl.org
> > GMOD Coordinator (http://www.gmod.org/) 216-392-3087
> > Cold Spring Harbor Laboratory
> >
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at portal.open-bio.org
> > http://portal.open-bio.org/mailman/listinfo/bioperl-l
> > ---
> > avast! Antivirus: Inbound message clean.
> > Virus Database (VPS): 0451-2, 17/12/2004
> > Tested on: 21/12/2004 00:30:06
> > avast! is copyright (c) 2000-2003 ALWIL Software.
> > http://www.avast.com
> >
> >
>
> ---
> avast! Antivirus: Outbound message clean.
> Virus Database (VPS): 0451-2, 17/12/2004
> Tested on: 21/12/2004 01:20:33
> avast! is copyright (c) 2000-2003 ALWIL Software.
> http://www.avast.com
>
>
>
>
>
--
------------------------------------------------------------------------
Scott Cain, Ph. D. cain at cshl.org
GMOD Coordinator (http://www.gmod.org/) 216-392-3087
Cold Spring Harbor Laboratory
More information about the Bioperl-l
mailing list