[Bioperl-l] ppm of bioperl release candidate

Scott Cain cain at cshl.org
Tue Dec 21 00:09:56 EST 2004


Thanks Nathan,

I did as Lincoln suggested and just tarred up the blib directory.  The
ppd file I already had will serve, as for me at least, I just need the
prerequisites that are needed for gbrowse--trying to do more is beyond
what I want for right now.

Thanks,
Scott


On Tue, 2004-12-21 at 01:21 +0000, Nathan Haigh wrote:
> I have been working on making a ppd file for the upcoming 1.5 bioperl release as well as a bioperl-run ppd and associated tar.gz
> files. In these ppd files I have tried to include as many of the bioperl dependencies I could find so that the user will only need
> to install the bioperl ppd via PPM (if the user needs to use PPm, chances are, they'll want everything installed so they don't have
> the hassle of wondering why things don't work at a later date); without this the user my have limited bioperl functionality due to
> missing dependencies (or other modules that are required for extended functionality).
> 
> I can let you have the ppd file, then all you need to do is generate the tar.gz file from the blib dir as Lincoln suggested, and
> modify the ppm file so it points to the tar.gz file.
> 
> Nathan
> 
> > -----Original Message-----
> > From: bioperl-l-bounces at portal.open-bio.org [mailto:bioperl-l-bounces at portal.open-bio.org] On Behalf Of Scott Cain
> > Sent: 20 December 2004 20:07
> > To: Lincoln Stein; Aaron J. Mackey
> > Cc: Bioperl list
> > Subject: [Bioperl-l] ppm of bioperl release candidate
> > 
> > Hi Lincoln and Aaron,
> > 
> > Before I announce the release of the ppm version of GBrowse, I really
> > should have a ppm version of bioperl.  In the past, we've hosted
> > "unofficial" ppm builds of bioperl at www.gmod.org/ggb/ppm (the same
> > place as the gbrowse ppm), though to the best of my recollection, I've
> > never done the build myself.  Is there any reason I wouldn't be able to
> > do a 'make ppd' in bioperl-live and get something useful?  Or is there a
> > ppm build of the current release candidate already available?
> > 
> > Thanks,
> > Scott
> > 
> > --
> > ------------------------------------------------------------------------
> > Scott Cain, Ph. D.                                         cain at cshl.org
> > GMOD Coordinator (http://www.gmod.org/)                     216-392-3087
> > Cold Spring Harbor Laboratory
> > 
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-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                         cain at cshl.org
GMOD Coordinator (http://www.gmod.org/)                     216-392-3087
Cold Spring Harbor Laboratory



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