[Bioperl-l] Tabular BLAST output and SearchIO

[Jason Stajich]

I think you've already figured it out based on your other question but 
'blasttable' since it is hard to auto-detect this format we made it a 
separate SearchIO parser module.

-jason
On Dec 13, 2004, at 5:25 AM, michael watson ((IAH-C)) wrote:

> Hi
>
> Do I have to do anything special with SearchIO objects to get them to
> read NCBI blast output produced with the "-m 8" (tabular without 
> comment
> lines) option?  Because I'm using it as I would with a normal BLAST
> output format and getting an undefined value when calling next_result()
>
> (using bioperl 1.4 on Suse Linux)
>
> Thanks
> Mick
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l
>
>
--
Jason Stajich
jason.stajich at duke.edu
http://www.duke.edu/~jes12/