[Bioperl-l] Tabular BLAST output and SearchIO

[michael watson (IAH-C)]

Sorry, ignore me, I need to use the "blasttable" format.

Mick

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org] On Behalf Of michael
watson (IAH-C)
Sent: 13 December 2004 10:26
To: Bioperl
Subject: [Bioperl-l] Tabular BLAST output and SearchIO


Hi

Do I have to do anything special with SearchIO objects to get them to
read NCBI blast output produced with the "-m 8" (tabular without comment
lines) option?  Because I'm using it as I would with a normal BLAST
output format and getting an undefined value when calling next_result()

(using bioperl 1.4 on Suse Linux)

Thanks
Mick

_______________________________________________
Bioperl-l mailing list
Bioperl-l at portal.open-bio.org
http://portal.open-bio.org/mailman/listinfo/bioperl-l