[Bioperl-l] Developers: what do you want to fix before 1.4 release?

[Jason Stajich]

I am fixing up blast parsing to get the gapped, ungapped, and
frame-specific lambda,kappa, entropy from the reports for those who want
this.  I will also try and make sure we are getting more of the parameters
from the reports into the Result objects.

Presumably we had talked about remove SearchIO/psiblast.pm from 1.4
release - not sure if that is still a good idea.

I also have some more work on the PopGen objects to make sure all the
numbers are correct for some of the implemented tests.

-jason

On Mon, 24 Nov 2003, Heikki Lehvaslaiho wrote:

>
> With developer snapshot 1.3.03 out last Friday, I'd like to hear from bioperl
> developers what they'd like to accomplish before 1.4 comes out.
>
> At this stage, I'd rather not see major new features added; there will not be
> time to test them properly.
>
> I'd especially like to hear from
> * Lincoln Stein / Todd Harris about the SVG timetable
> * Stefan Kirov about Bio::Matrix::PSM modules
> * anyone else about their pet modules and bugs
>
> I'll give you three choices:

> 1. You've got a fix/enhancement under way and you can give me timetable
> for it to be in.

> 2. There is a bug that need to be fixed before the release but you do
> not know how to do it.  Let's discuss that now!

> 3. Your modules are not ready for release and you do not have time to
> work on your code. That means that they will need to be excluded from
> the release.
>
> I am pretty happy with the current status of bioperl CVS tree. Tests
> pass, but there still are bugs in bugzilla. I urge anyone and everyone
> to have a look at the bugzilla and see what they think of the bugs still
> there.
>
> Realistically, we have couple of weeks time to get the fixes in. Then a
> week to wait to make sure everyone has time to make sure that everything
> works.
>
> 	-Heikki "Let's push 1.4 out"
>
>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu