[Bioperl-l] Drawing Chromosomes

[Lincoln Stein]

Hi Gaetan,

If you set bump to false (0), the centromere will probably be drawn in the 
proper place.

Lincoln

On Tuesday 18 November 2003 11:16 am, Gaetan wrote:
> Hello,
> I am currently working with gbrowse to integrate/display various rice
> annotations on TIGR pseudo-chromosomes. Everything is working well and I
> try to play with
> the ideogram.pm module to draw chromosomes (from a previously email
> posted from Lincoln Stein)
>
> When I use this module centromeres and cytobands were not aligned.
>
> Any help will be welcome !!!!
>
> Here the picture and the GFF source I worked with
>
> Thanks,
>
> Gaetan Droc
>
>
> GFF source
>
> 1    TIGR    cytoband    1    16000000    .    +    .    CytoBand B3;
> Stain gpos25
> 1    TIGR    cytoband    16000001    18000000    .    +    .
> Centromere Chr1
> 1    TIGR    cytoband    18000001    42904173    .    +    .    CytoBand
> B2; Stain gpos25
>
> Picture
> Chromosome

-- 
Lincoln Stein
lstein at cshl.edu
Cold Spring Harbor Laboratory
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