[Bioperl-l] Drawing chromosomes in Generic Genome Browser

[Gaetan]

Hello,
I am currently working with gbrowse to integrate/display various rice 
annotations on TIGR pseudo-chromosomes. Everything is working well and I 
try to play with
the ideogram.pm module to draw chromosomes (from a previously email 
posted from Lincoln Stein)

When I use this module centromeres and cytobands were not aligned.

Any help will be welcome !!!!

Here the picture and the GFF source I worked with

Thanks,

Gaetan Droc


GFF source

1    TIGR    cytoband    1    16000000    .    +    .    CytoBand B3; 
Stain gpos25
1    TIGR    cytoband    16000001    18000000    .    +    .    
Centromere Chr1
1    TIGR    cytoband    18000001    42904173    .    +    .    CytoBand 
B2; Stain gpos25

Picture

Chromosome

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