[Bioperl-l] usage of Bio::SeqIO::tigr

[Josh Lauricha]

To be annoyingly precise, SeqIO.pm doesn't need to be modified, tigr.pm
from CVS needs to be dumped into the SeqIO directory. It should work
with 1.2.3, unless I've installed CVS unwitingly.

Yue, if you run into any bugs, please let me know, its only been tested
locally on ath and osa. Oh, and the 1.0 release of osa is massivly
messed up, somehow several exons are outside the gene... by like 8000bp.
The module should skip these...

On Wed 11/19/03 20:41, Jason Stajich wrote:
> CVS:
>  http://cvs.open-bio.org
> Or bioperl developer releases (1.3.X)
> 
> On Wed, 19 Nov 2003, Yue Ke wrote:
> 
> > Greeting,
> > I am very interested in Bio::SeqIO::tigr.pm and would like to try it out
> > on Tiger Xml file. Could anyone tell me the usage of it? Could I still
> > use the following:
> > my $SIO = Bio::SeqIO->new(-file=> $fn, '-format' => 'Tigr');
> > If so, SeqIO.pm must  be modified. Where could I get the new version of
> > SeqIO.pm.....
> >
> > Thanks in advanced!
> >
> > Yue
> >
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at portal.open-bio.org
> > http://portal.open-bio.org/mailman/listinfo/bioperl-l
> >
> 
> --
> Jason Stajich
> Duke University
> jason at cgt.mc.duke.edu
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l
> 

-- 

----------------------------
| Josh Lauricha            |
| laurichj at bioinfo.ucr.edu |
| Bioinformatics, UCR      |
|--------------------------|