[Bioperl-l] new HOWTO: SimpleWebAnalysis

Heikki Lehvaslaiho heikki at ebi.ac.uk
Fri Nov 14 10:14:37 EST 2003


In the bioperl-live CVS ( and 1.3 snap shots) we have several new
modules that try to make life easier when you want to automate using
sequence analysis algorithms from web forms.

Richard Adams has now written a HOWTO document about his
Bio::Tools::Analysis modules. See into /doc/howto/{sgml|html|pdf|txt} 
for the SimpleWebAnalysis document in you favourite  format (it is CVS
only for now).

Summary: 

Richard has written a superclass
Bio::Tools::Analysis::SimpleAnalysisBase, which implements
Bio::SimpleAnalysisI and inherits from Bio::WebAgent. Adding a new
form-based sequence service is easily done by sub-classing,
specifying a some parameters and overriding a few methods. Seven
different services have been added to date, with more to come.


Enjoy,
	-Heikki

-- 
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      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho    heikki_at_ebi ac uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
   _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
  _/  _/  _/  Cambs. CB10 1SD, United Kingdom
     _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
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