[Bioperl-l] Bio::Tools::Run::Phylo::PAML::Codeml

[Jason Stajich]

On Mon, 10 Nov 2003, Derek Gatherer wrote:

> Hi
>
> try this:
> _________________________
> #!/usr/bin/perl -w
>
> use lib "/usr/local/lib/site_perl/5.8.0/";
> use strict;
>
> use Bio::Tools::Run::Phylo::PAML::Codeml;
> ______________________________________
>
> I get the following:
>
> BEGIN failed--compilation aborted at
> /usr/local/lib/site_perl/5.8.0//Bio/Tools/Phylo/PAML.pm line 168.
>
> The offending line is:
>
> use IO::String;
>
> find /usr/local/lib/site_perl/5.8.0/ -name String.pm
>
> gives nothing.  Am I missing a module?  Commenting this line out allows the

How about installing the module IO::String?  You need this to parse the
trees out of Codeml output I think.


> script above to run, but I am unsure of its effect in other places.
>
> Cheers
> Derek
>
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>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu