[Bioperl-l] Bio::Tools::Run::Phylo::PAML::Codeml

Derek Gatherer d.gatherer at vir.gla.ac.uk
Mon Nov 10 12:01:01 EST 2003


Hi

try this:
_________________________
#!/usr/bin/perl -w

use lib "/usr/local/lib/site_perl/5.8.0/";
use strict;

use Bio::Tools::Run::Phylo::PAML::Codeml;
______________________________________

I get the following:

BEGIN failed--compilation aborted at 
/usr/local/lib/site_perl/5.8.0//Bio/Tools/Phylo/PAML.pm line 168.

The offending line is:

use IO::String;

find /usr/local/lib/site_perl/5.8.0/ -name String.pm

gives nothing.  Am I missing a module?  Commenting this line out allows the 
script above to run, but I am unsure of its effect in other places.

Cheers
Derek



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