[Bioperl-l] Glimmer

[michael watson (IAH-C)]

Thanks Jason :-)

The website confusion comes from the presence of the file:

CURRENT_STABLE_IS_1_2_2

under http://www.bioperl.org/DIST/

Thanks again, 

Mick

-----Original Message-----
From: Jason Stajich [mailto:jason at cgt.duhs.duke.edu]
Sent: 03 November 2003 11:57
To: michael watson (IAH-C)
Cc: Bioperl-l at bioperl.org
Subject: RE: [Bioperl-l] Glimmer


As I said in my message, it is NOT in the 1.2.x series so it won't be in
1.2.2 or in 1.2.3. The latest stable release is 1.2.3 which the website
correctly reports.  If you are confused about the distinction between
development and stable releases this is covered in the FAQ I hope.

The Glimmer parser is only available in the development series releases
1.3.x OR directly from CVS.

The code is pretty generic so I think you could probably download it from
1.3.x or from CVS and drop it into the 1.2.x distribution and it should
just work.

-jason
On Mon, 3 Nov 2003, michael watson (IAH-C) wrote:

> I have Bioperl 1.2.2, but this doesn't include Bio::Tools::Glimmer
>
> There is conflicting info on bioperl.org, what is the current stable release, Bioperl 1.2.2 or 1.2.3?
>
> Thanks
> Mick
>
> -----Original Message-----
> From: Jason Stajich [mailto:jason at cgt.duhs.duke.edu]
> Sent: 31 October 2003 18:41
> To: michael watson (IAH-C)
> Cc: Bioperl-l at bioperl.org
> Subject: Re: [Bioperl-l] Glimmer
>
>
> Bio::Tools::Glimmer
>
> Only in CVS or or 1.3.x releases NOT in 1.2.x series.
>
> -jason
>
> On Fri, 31 Oct 2003, michael watson (IAH-C) wrote:
>
> > Hi
> >
> > Does anyone have, or does there exist, any perl modules to parse and handle the output from glimmer?
> >
> > Thanks
> >
> > Michael Watson
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at portal.open-bio.org
> > http://portal.open-bio.org/mailman/listinfo/bioperl-l
> >
>
> --
> Jason Stajich
> Duke University
> jason at cgt.mc.duke.edu
>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu