[Bioperl-l] Installation of Bioperl1.2

[Jason Stajich]

Just do:
cpan> force install B/BI/BIRNEY/bioperl-1.2.tar.gz

On Fri, 17 Jan 2003, Eley Greg wrote:

> I too had issues installing BioPerl 1.2 through CPAN on Redhat 8.0.
>
> cpan> install B/BI/BIRNEY/bioperl-1.2.tar.gz (second attempt)
> Running make for B/BI/BIRNEY/bioperl-1.2.tar.gz
>   Is already unwrapped into directory /root/.cpan/build/bioperl-1.2
>   Has already been processed within this session
> Running make test
> PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e"
> "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
> ...
> (running through tests)
> ...
> Failed Test        Stat    Wstat    Total    Fail    Failed    List of
> Failed
> -------------------------------------------------------------------------------
> t/BioGraphics.t                        14      1      7.14%       2
> t/RootIO.t                             25      2      8.00%       14 18
> 4 subtests skipped.
> Failed 2/134 test scripts, 98.51% okay. 3/6020 subtests failed, 99.95% okay.
> make: *** [test_dynamic] Error 29
>   /usr/bin/make test -- NOT OK
> Running make install
>   make test had returned bad status, won't install without force
> cpan>
>
> What do tests 14 & 18 of RootIO and test 2 of BioGraphics need?  Is this
> a common error?  Should I down load and make myself as Vicky is trying
> to do?  Thanks.
>
> Greg
>
> Hsu, Vicky wrote:
>
> >Hi,
> >
> >The output I get from trying to install bioperl1.2 on an SGI server is as
> >follows:
> >
> > prompt> make
> > mkdir blib
> > mkdir blib/lib
> > mkdir blib/arch
> > mkdir blib/arch/auto
> > mkdir blib/arch/auto/Bio
> > mkdir blib/lib/auto
> > mkdir blib/lib/auto/Bio
> > mkdir blib/man3
> > ***Termination code 139 (bu21)
> >
> >  I couldn't find any documentation on what termination code 139 means. Any
> >suggestions? Thank you.
> >
> >Vicky
> >_______________________________________________
> >Bioperl-l mailing list
> >Bioperl-l@bioperl.org
> >http://bioperl.org/mailman/listinfo/bioperl-l
> >
> >
>
>
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l@bioperl.org
> http://bioperl.org/mailman/listinfo/bioperl-l
>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu