[Bioperl-l] HMMER/Results

[Jason Stajich]

I believe this is already fixed as of bioperl-1.0.1
Can you report what version of bioperl or the revision ID for that
module (% perldoc -m Bio::Tools::HMMER::Result | grep Id)

-j

On Thu, 4 Jul 2002, Mick Watson wrote:

> Hi
>
> In Bio::Tools::HMMER::Results, line 348 has the code:
>
>     $new = Bio::Tools::HMMER::Results->new();
>
> This is in the &filter_on_cutoff method.
>
> However, &new in the same module complains if you don't give it a -type
> argument!
>
> The correct line should be:
>
>     $new = Bio::Tools::HMMER::Results->new(-type => 'hmmsearch');
>
> There should also be a "return $new;" as the last line in the method
>
> Thanks
> Mick
>
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-- 
Jason Stajich
Duke University
jason at cgt.mc.duke.edu