[Bioperl-l] HMMER/Results

[Mick Watson]

Version 0.7.2, the bioperl thats shipped with Ensembl :o)

Jason Stajich wrote:

> I believe this is already fixed as of bioperl-1.0.1
> Can you report what version of bioperl or the revision ID for that
> module (% perldoc -m Bio::Tools::HMMER::Result | grep Id)
>
> -j
>
> On Thu, 4 Jul 2002, Mick Watson wrote:
>
> > Hi
> >
> > In Bio::Tools::HMMER::Results, line 348 has the code:
> >
> >     $new = Bio::Tools::HMMER::Results->new();
> >
> > This is in the &filter_on_cutoff method.
> >
> > However, &new in the same module complains if you don't give it a -type
> > argument!
> >
> > The correct line should be:
> >
> >     $new = Bio::Tools::HMMER::Results->new(-type => 'hmmsearch');
> >
> > There should also be a "return $new;" as the last line in the method
> >
> > Thanks
> > Mick
> >
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l@bioperl.org
> > http://bioperl.org/mailman/listinfo/bioperl-l
> >
>
> --
> Jason Stajich
> Duke University
> jason at cgt.mc.duke.edu