[Bioperl-l] HMMER/Results

Mick Watson michaelwatson@paradigm-therapeutics.co.uk
Thu, 04 Jul 2002 15:18:08 +0100


Hi

In Bio::Tools::HMMER::Results, line 348 has the code:

    $new = Bio::Tools::HMMER::Results->new();

This is in the &filter_on_cutoff method.

However, &new in the same module complains if you don't give it a -type
argument!

The correct line should be:

    $new = Bio::Tools::HMMER::Results->new(-type => 'hmmsearch');

There should also be a "return $new;" as the last line in the method

Thanks
Mick