[Bioperl-l] Modules for Lucy and helixturnhelix

[Heikki Lehvaslaiho]

Andrew,

If you have interest of putting your code into bioperl yourself, you
can get a CVS account simply by asking. Otherwise, yes please, put
your code with example files, and if possible, with tests, somewhere
and I am sure someone will put them into bioperl CVS. 

	-Heikki

Andrew Walsh wrote:
> 
> Hi Everyone,
> 
> I have written modules related to Lucy (a vector/quality trimming program from TIGR) and helixturnhelix (a DNA binding site detection program, part of the EMBOSS package).
> 
> For each program I've written a module that creates 'factory' objects for performing analysis (they are based on Peter Schattner's Bio::Tools::Run::Alignment::ClustalW).  These modules return references to objects created with another set of modules I wrote.  These returned objects have methods that will return parsed information from the Lucy or helixturnhelix output files.
> 
> I was wondering if this is the kind of thing anyone would be interested in, and if so, where should I send it (Script Central?).  I'm writing POD documention in the same format as for the Bioperl modules.  The code has been 'Bioperlized' in the sense that there is inheritance from Bio::Root::RootI and temp files are created with methods from Root::IO.  If there is interest, I can put the POD docs and code on our web server for someone to review.
> 
> Thanks,
> 
> Andrew
> 
> -------------------------------------------
> Andrew Walsh
> Cereal Research Centre
> Agriculture and Agri-Food Canada
> 195 Dafoe Rd
> Winnipeg, MB, R3T 2M9
> Canada
> Phone: (204) 984-2179
> Fax: (204) 983-4604
> 
> -------------------------------------------
> Andrew Walsh
> Cereal Research Centre
> Agriculture and Agri-Food Canada
> 195 Dafoe Rd
> Winnipeg, MB, R3T 2M9
> Canada
> Phone: (204) 984-2179
> Fax: (204) 983-4604
> 
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-- 
______ _/      _/_____________________________________________________
      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho          heikki@ebi.ac.uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
   _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
  _/  _/  _/  Cambs. CB10 1SD, United Kingdom
     _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
___ _/_/_/_/_/________________________________________________________