[Bioperl-l] Modules for Lucy and helixturnhelix

[Andrew Walsh]

Hi Everyone,

I have written modules related to Lucy (a vector/quality trimming program from TIGR) and helixturnhelix (a DNA binding site detection program, part of the EMBOSS package).   

For each program I've written a module that creates 'factory' objects for performing analysis (they are based on Peter Schattner's Bio::Tools::Run::Alignment::ClustalW).  These modules return references to objects created with another set of modules I wrote.  These returned objects have methods that will return parsed information from the Lucy or helixturnhelix output files.

I was wondering if this is the kind of thing anyone would be interested in, and if so, where should I send it (Script Central?).  I'm writing POD documention in the same format as for the Bioperl modules.  The code has been 'Bioperlized' in the sense that there is inheritance from Bio::Root::RootI and temp files are created with methods from Root::IO.  If there is interest, I can put the POD docs and code on our web server for someone to review.

Thanks,

Andrew 

-------------------------------------------
Andrew Walsh
Cereal Research Centre
Agriculture and Agri-Food Canada
195 Dafoe Rd
Winnipeg, MB, R3T 2M9
Canada
Phone: (204) 984-2179
Fax: (204) 983-4604


-------------------------------------------
Andrew Walsh
Cereal Research Centre
Agriculture and Agri-Food Canada
195 Dafoe Rd
Winnipeg, MB, R3T 2M9
Canada
Phone: (204) 984-2179
Fax: (204) 983-4604