[Bioperl-l] BPlite -> SeqAnalysisParserI.pm

Mon, 2 Jul 2001 17:45:17 -0400

I finally traced the issue back to a 'use lib' that was getting overridden.
My apologies, esp. to Heikki for trying to reproduce the error.

Regards,
- jc

-------------------------------------------------
James Diggans
Bioinformatics Programmer
Gene Logic, Inc.
Phone: 301.987.1756
FAX: 301.987.1701

                    Heikki                                                                                
                    Lehvaslaiho              To:     jdiggans@genelogic.com                               
                    <heikki@ebi.ac.uk        cc:     bioperl-l@bioperl.org                                
                    >                        Subject:     Re: [Bioperl-l] BPlite -> SeqAnalysisParserI.pm 
                    Sent by:                                                                              
                    bioperl-l-admin@b                                                                     
                    ioperl.org                                                                            

                    07/02/01 04:28 PM                                                                     

I can not reproduce the error using the 07 branch from CVS using:

$ perl -v

This is perl, v5.6.0 built for i386-linux ...

$ export PERL5LIB=/home/heikki/src/bioperl-07
$ perl -e 'use Bio::Tools::BPlite; my $report = new Bio::Tools::BPlite;';

Can anyone else?

           -Heikki

jdiggans@genelogic.com wrote:
>
> Hi all, I just updated my local distro to 0.71 and am trying to port a
> rather heavy script using Bio::Tools::Blast to instead use
> Bio::Tools::BPlite for speed reasons. Now, however, when running:
>
>      my $report = new Bio::Tools::BPlite(-fh => \*BLASTREPORT);
>
> I get back:
>
>      Can't locate object method "new" via package
"Bio::SeqAnalysisParserI"
>      at /loc/to/my/distro/SeqAnalysisParserI.pm line 101
>
> which reads:
>
>      return $class->SUPER::new(@args);
>
> Now SeqAnalysisParserI.pm ISA RootI and RootI definitely has a new() ...
> can anyone imagine why I'd be getting the above? I wouldn't ask but I've
> looked all over creation and can't find why I should get this particular
> error ....
>
> Regards.
> - j
>
> -------------------------------------------------
> James Diggans
> Bioinformatics Programmer
> Gene Logic, Inc.
> Phone: 301.987.1756
> FAX: 301.987.1701
>
> ========================================================
> The information contained in this email message is intended only
> for the personal use of the recipient(s) named above.  This
> message may be privileged and confidential and protected from
> disclosure.  If the reader of this message is not the intended
> recipient or an agent responsible for delivering it to the intended
> recipient, you are hereby notified that you have received this
> document in error and that any review,dissemination, distribution,
> or copying of this message is strictly prohibited.  If you have
> received this communication in error, please notify us immediately
> by email, and delete the original message.
> ========================================================
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l@bioperl.org
> http://bioperl.org/mailman/listinfo/bioperl-l

--
______ _/      _/_____________________________________________________
      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho          heikki@ebi.ac.uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
   _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
  _/  _/  _/  Cambs. CB10 1SD, United Kingdom
     _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
___ _/_/_/_/_/________________________________________________________
_______________________________________________
Bioperl-l mailing list
Bioperl-l@bioperl.org
http://bioperl.org/mailman/listinfo/bioperl-l