[Bioperl-l] install problems?
george
ghrose@unm.edu
Fri, 27 Apr 2001 16:57:48 -0600
I am trying to use the BPlite module of bioperl w/ the script
in the tutorial.
use Bio::Tools::BPlite;
$report = new BPlite(-fh=>\*STDIN);
$report->query;
while(my $sbjct = $report->nextSbjct) {
$sbjct->name;
while (my $hsp = $sbjct->nextHSP) { $hsp->score; }
}
I get the message :
#Can't locate object method "new" via package "BPlite" at
./testbplite.pl line 4.
when i run the parse_blast2.pl script in the examples folder it runs correctly
until it gives a error message of
Can't find the object method "layout" via package Bio::Seq at
parse_blast2.pl line 135, <STDIN> chunk 3.
Have I installed bioperl correctly? Do I need additional modules?
redhat 6.2, perl 5.005
Any advise would be appreciated
Thanks
george