[Bioperl-l] bug #952

[Heikki Lehvaslaiho]

Jason,

How are these parsing changes affecting dbfetch????

dbfetch 'uses ' only CGI, CGI::Carp, POSIX. There are no
bioperl dependencies at the server side.

	-Heikki

Jason Stajich wrote:
> 
> Hmm, either gin&tonics or the subsequent slow day (thanks Ewan ;) must
> make me see problems more clearly...
> 
> I've checked in a fix to Bio::SeqIO::FTHelper which parses remote
> locations properly (bug #952), please check out bioperl-live head and give
> it a whirl on your favorite accessions that are problematics.  Elia, can
> we try and do another full EMBL parse when you get back? or perhaps a
> subset of the cases that failed?  Added test case to t/SeqIO.t to catch
> the reported bug.  If this is indeed a good fix - Heikki you'll need to
> make sure machine where embl dbfetch is running gets these changes applied
> to Bio::SeqIO::FTHelper.
>
> -Jason
> 
> Jason Stajich
> jason@chg.mc.duke.edu
> Center for Human Genetics
> Duke University Medical Center
> http://www.chg.duke.edu/
> 
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______ _/      _/_____________________________________________________
      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho          heikki@ebi.ac.uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
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