[Bioperl-l] Re: AF165282 and Bio::DB::GenBank

[Jason Stajich]

okay, Aaron is looking into a nice parser for the features via a grammer,
but maybe we should put put our heads together while I am @EBI to
see if we can revamp those regexps in FTHelper to behave properly.

-jason

On Tue, 24 Apr 2001, Elia Stupka wrote:

> > The offending features look somthing like this which the regexps aren't
> > handling I'm guessing.
>
> Hi Jason,
>
> I hav ejust gone through all human EMBL and bumped into 20364 feature
> location warnings in a total of 223769 entries and God knows how many
> locations. I think considering the madness of the format we are not doing
> too bad, but considering that people don't care, all they want is those
> features to come out, we should work on it. I will be probably debugging
> some of them in the next few days if I find some time.
>
> Elia
>
>
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Jason Stajich
jason@chg.mc.duke.edu
Center for Human Genetics
Duke University Medical Center
http://www.chg.duke.edu/