[Bioperl-l] remote ncbi blast

[Jason Stajich]

On Thu, 5 Apr 2001, gert thijs wrote:

> Jason Stajich wrote:
> >
> >    A second approach is to try and submit a job via HTTP and use the
> > queueing system and checking back periodically to see if a job is
> > finished.  This will require some reverse engineering of ncbi blast
> > request forms and I suspect would not be the easiest thing in the world so
> > I would leave it as a second tier approach.  It is more attractive because
> > we can implement a pure perl solution.
>
> I have implemented this type of blastserver already using LWP. I can say that
> it was not hard to implement but I have only implemented a limited number of
> parameter settings .
>
Would you be willing to donate the part that works?
Bio::Tools::Run::RemoteBlast?

>
> --
> + Gert Thijs
> +
> + email: gert.thijs@esat.kuleuven.ac.be
> + homepage: http://www.esat.kuleuven.ac.be/~thijs
> +
> + K.U.Leuven
> + ESAT-SISTA
> + Kasteelpark Arenberg 10
> + B-3001 Leuven-Heverlee
> + Belgium
> + Tel : +32 16 32 18 84
> + Fax : +32 16 32 19 70
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Jason Stajich
jason@chg.mc.duke.edu
Center for Human Genetics
Duke University Medical Center
http://www.chg.duke.edu/