[Bioperl-l] Bio::DB::EMBL

[Ewan Birney]

On Wed, 4 Apr 2001, Heikki Lehvaslaiho wrote:

> Hi,
> 
> The new version of emblfetch cgi script went live today here at EBI.
> It is now possible to retrieve raw text files without HTML tags which
> makes entries a lot easier to parse.
> 
> I've just committed Bio::DB::EMBL which has four methods for
> retrieving entries:
> 
> get_Seq_by_id()
> get_Seq_by_acc()
> get_Seq_by_version()
> get_Stream_by_batch()
> 
> 
> Design issues:
> 
> The get_Seq_by_version() is a new method and should probably be added
> into  
> 
> get_Stream_by_batch() is in Bio::DB::NCBIHelper but I rather not
> inherit from it. ;-) Bio::DB::WebDBSeqI again?

I'm cool with Bio::DB::WebDBSeqI changes...

   get_Stream_by_batch()

and

   get_Seq_by_version (should this be get_Seq_by_acc_version?)

Jason?


> 
> 
> BTW, from the servers point of view it is exactly the same which
> method you use, it takes in up to 50 identifiers and returns the
> corresponding unique entries.
> 
> Have fun,
> 
> 	-Heikki
> 
> -- 
> ______ _/      _/_____________________________________________________
>       _/      _/                      http://www.ebi.ac.uk/mutations/
>      _/  _/  _/  Heikki Lehvaslaiho          heikki@ebi.ac.uk
>     _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
>    _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
>   _/  _/  _/  Cambs. CB10 1SD, United Kingdom
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Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
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