Bioperl: module for sequence content analysis?

[Ewan Birney]

On Fri, 14 Jan 2000, Gatherer, D. (Derek) wrote:

> Dear Bioperlers
> 
> Is there a Bioperl module that has a method returning the codon frequency
> table, or amino acid frequency table, or some other kind of hashed content
> data for Bio::Seq objects?  I am most interested in overlapping triplet
> frequencies in large FASTA-formatted databases.

Not that I know of. If you write something, please contribute...


> 
> Thanks
> 
> Derek Gatherer
> Target Discovery
> Organon Laboratories Ltd
> Newhouse
> Scotland ML1 5SH
> =========== Bioperl Project Mailing List Message Footer =======
> Project URL: http://bio.perl.org/
> For info about how to (un)subscribe, where messages are archived, etc:
> http://www.techfak.uni-bielefeld.de/bcd/Perl/Bio/vsns-bcd-perl.html
> ====================================================================
> 

-----------------------------------------------------------------
Ewan Birney. Work: +44 (0)1223 494992. Mobile: +44 (0)7970 151230
<birney@sanger.ac.uk>
http://www.sanger.ac.uk/Users/birney/
-----------------------------------------------------------------

=========== Bioperl Project Mailing List Message Footer =======
Project URL: http://bio.perl.org/
For info about how to (un)subscribe, where messages are archived, etc:
http://www.techfak.uni-bielefeld.de/bcd/Perl/Bio/vsns-bcd-perl.html
====================================================================