Bioperl: module for sequence content analysis?

Gatherer, D. (Derek) D.Gatherer@organon.nhe.akzonobel.nl
Fri, 14 Jan 2000 08:49:34 +0100


Dear Bioperlers

Is there a Bioperl module that has a method returning the codon frequency
table, or amino acid frequency table, or some other kind of hashed content
data for Bio::Seq objects?  I am most interested in overlapping triplet
frequencies in large FASTA-formatted databases.

Thanks

Derek Gatherer
Target Discovery
Organon Laboratories Ltd
Newhouse
Scotland ML1 5SH
=========== Bioperl Project Mailing List Message Footer =======
Project URL: http://bio.perl.org/
For info about how to (un)subscribe, where messages are archived, etc:
http://www.techfak.uni-bielefeld.de/bcd/Perl/Bio/vsns-bcd-perl.html
====================================================================