Bioperl: module for sequence content analysis?

Gatherer, D. (Derek)
Fri, 14 Jan 2000 08:49:34 +0100

Dear Bioperlers

Is there a Bioperl module that has a method returning the codon frequency
table, or amino acid frequency table, or some other kind of hashed content
data for Bio::Seq objects?  I am most interested in overlapping triplet
frequencies in large FASTA-formatted databases.


Derek Gatherer
Target Discovery
Organon Laboratories Ltd
Scotland ML1 5SH
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