Bioperl: Parsing GenBank reports from NCBI.

[Ewan Birney]

On Thu, 21 Oct 1999, Kutbuddin Doctor wrote:

> Hi,
> 
> I have used Bio::DB::GenPept to retrieve and parse FASTA records from
> NCBI. Are there other modules available (currently) that do the same for
> the more detailed "GenBank" report?

Over here at the EBI, Elia Stukpa is writing this module. You want to use
it with the new AnnSeq object (annotated sequence object). 


It will be out in 0.6 - which is due sometime around the end of this year.
Once we get anonymous cvs working you will be able to access the latest
version about 4 hours after it is committed, so possible in one or two
weeks there will be something.



 > 
> I have corresponded with the author of the Bio::DB::GenPept who says such
> a module will probably released with the new Bio::Seq module. I have no
> idea when that will come about - so I though that maybe someone has thier
> own solution. 
> 
> I would also be interested in code if anyone is willing to share thier
> invention of this "wheel". I actually need the code for protein queries
> rather than DNA. 
> 
> 
> thanks,
> Kutbuddin.
> 
> 
> -<>--<>--<>--<>--<>--<>--<>--<>-
> Kutbuddin S. Doctor, PhD 
> Burnham Institute,
> 10901 N. Torrey Pines Rd.,
> La Jolla, CA 92037
> Ph: (858) 646-3100 ext 3488
>     (858) 550-0786 (H)
> ksdoctor@burnham-inst.org
> ksdoctor@sdsc.edu
> -<>--<>--<>--<>--<>--<>--<>--<>-
> 
> 
> 
> 
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