Bioperl: Reading from a stream into Bio::Seq

Matthew Pocock mrp@sanger.ac.uk
Wed, 28 Oct 1998 12:27:59 +0000


You can download a copy of my baseclass from:
http://www.sanger.ac.uk/~mrp/MRP::BaseClass.pm
and look at the pod at:
http://www.sanger.ac.uk/~mrp/MRP::BaseClass.html
(yes, i know, module names shouldn't have :: in them, but it makes it
easier for downloading)

The pod is quite verbose, and has several examples.

If you are thinking of using some of the ideas from this in BIO::Root,
then my code needs rationalizing. In particular, some functions should
be moved to an INTROSPECTION module, some into CODEGENERATION and some
into a text library. Anyway, if and when we come to it...

Ewan Birney wrote:
> 
> On Tue, 27 Oct 1998, Matthew Pocock wrote:
> 
> [...lots of goodies...]
> 
> >
> > Anyway, if you are interested, I will send in the module.
> >
> 
> This sounds great. Weird of course that I have to hear it bounced
> off germany when you are next door... but still...
> 
> The sensible thing is to add this or make it hybrid with the
> Bio::Root::Object class system - do you think this possible?
> 
> should we talk about this on guts? - before we start doing
> something serious stevec should check it over (and he seems...
> slightly snowed under). Why don't you pop it up somewhere
> on a web site for us to look at...
> 
> > >
> > > Ewan Birney
> > > <birney@sanger.ac.uk>
> > > http://www.sanger.ac.uk/Users/birney/
> > >
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> > Joon: You're out of your tree
> > Sam:  It wasn't my tree
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> 
> Ewan Birney
> <birney@sanger.ac.uk>
> http://www.sanger.ac.uk/Users/birney/

-- 
Joon: You're out of your tree
Sam:  It wasn't my tree
                                                 (Benny & Joon)
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