Bioperl: Re: FYI: Error:: Perl module

[Steve A. Chervitz]

> > I think Joe Ryan's recent suggestion about a Blast:: module 
> > name space makes alot of sense. My module would be more appropriately named 
> > Blast::Parse.pm since it has no methods for executing BLAST runs. My 
> > module also relies on two helper modules which could go in this name 
> > space.
> > 
> 
> I think it should be Something::Blast, as there are other analogous
> routines for sequence comparison result parsing and processing.
> 
> Indeed, my routines for FASTA, SSEARCH, MSP-CRUNCH, BLAST, WU-BLAST,
> BLAST2 and PSI-BLAST all rely on common code and are in one single module
> (called Grit::AlnParse)


I've put my BLAST and related modules into Bio::Tools::Blast. But I've 
been considering having a Bio::Tools::SeqAnal location, so it would be 

  Bio::Tools::SeqAnal::Blast::Parse.pm
  Bio::Tools::SeqAnal::Blast::Run.pm
  et al.

SteveC
 
 
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