[Biojava-l] java.lang.ExceptionInInitializerError in protein disorder module, JRonn

Srikanth Bezawada srikanth.5283 at gmail.com
Thu Mar 2 12:19:56 UTC 2017


Hi again,
I was using biojava-protein-disorder-4.1.0, when I used 4.2.6, it worked
fine.



On Thu, Mar 2, 2017 at 1:18 AM, Srikanth Bezawada <srikanth.5283 at gmail.com>
wrote:

> Hi BioJava,
>
> I get the following stack trace when I try to find disorder scores using
> biojava protein disorder module. Can you please let me know the fix ?
> Thanks in advance.
>
>
> Exception in thread "main" java.lang.ExceptionInInitializerError
> at biojavausage.BioJavaUsage.main(BioJavaUsage.java:*25*)
> Caused by: java.util.InputMismatchException
> at java.util.Scanner.throwFor(Scanner.java:864)
> at java.util.Scanner.next(Scanner.java:1485)
> at java.util.Scanner.nextInt(Scanner.java:2117)
> at java.util.Scanner.nextInt(Scanner.java:2076)
> at org.biojava.nbio.ronn.ModelLoader.loadModels(ModelLoader.java:175)
> at org.biojava.nbio.ronn.Jronn.<clinit>(Jronn.java:55)
> ... 1 more
>
>
>
> Here is the line *25* which is the same line from the test folder of
> biojava github.
>
> float[] rawProbabilityScores = Jronn.getDisorderScores(new
> FastaSequence("name", "LLRGRHLMNGTMIMRPWNFLNDHHFPKFFPHLIEQQAIWLADWWRKKHC"
> +
> "RPLPTRAPTMDQWDHFALIQKHWTANLWFLTFPFNDKWGWIWFLKDWTPGSADQAQRACTWFFCHGHDTN" +
> "CQIIFEGRNAPERADPMWTGGLNKHIIARGHFFQSNKFHFLERKFCEMAEIERPNFTCRTLDCQKFPWDDP"
> ));
>
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