[Biojava-l] NullPointerException when usingAlignments.getMultipleSequenceAlignment

[Amr AL-Hossary]

I agree with you 100%.

I have met problems this week in working with the SPICE code too, to the 
extent that I delayed the whole idea till I have more suitable time to 
reimplement it myself.

Amr

--------------------------------------------------
From: "Spencer Bliven" <sbliven at ucsd.edu>
Sent: Wednesday, October 05, 2011 7:39 PM
To: "Andreas Prlic" <andreas at sdsc.edu>
Cc: <biojava-l at lists.open-bio.org>
Subject: Re: [Biojava-l] NullPointerException when 
usingAlignments.getMultipleSequenceAlignment

> In the current SVN code (and therefor probably Biojava 3.0.2),
> CookbookMSA.java includes that import statement but is otherwise identical
> to the wiki version. It runs just fine for me. Probably updating to 
> Biojava
> 3.0.2 will fix the null pointer exception.
>
> This does highlight the problem of keeping the wiki synchronized with the
> current BioJava version. Ideally, part of the release process could 
> include
> automated updating of the wiki cookbook from the SVN code, with older
> versions available as a reference. However, I'm not sure that anyone would
> be willing to set up such a complex release process.
>
> -Spencer
>
> On Wed, Oct 5, 2011 at 10:21, Andreas Prlic <andreas at sdsc.edu> wrote:
>
>> Hi Hannes,
>>
>> > I noticed in an earlier discussion, there was some talk about this too
>> > (3-4 months ago, perhaps) and something about a possible fix in SVN.
>> > when will it be released on the maven server?
>>
>> What version are you on? We released Maven 3.0.2 just recently..
>>
>> Andreas
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