[Biojava-l] read DBLINK field from genbank file

Bart Mesuere bart.mesuere at ugent.be
Fri Mar 4 07:37:15 UTC 2011


Hi,

I'm trying to read some genbank files using the 1.7 legacy code. All works
fine but I'm having trouble extracting the projectid located in the DBLINK
field (in bold in the example):

LOCUS       NC_009926             374161 bp    DNA     circular BCT
> 25-JUL-2008
> DEFINITION  Acaryochloris marina MBIC11017 plasmid pREB1, complete
> sequence.
> ACCESSION   NC_009926
> VERSION     NC_009926.1  GI:158339488
> *DBLINK      Project: 58167*


I already inspected the SimpleRichSequence object with a debugger but
couldn't find anything useful. Is it possible to read this field using
biojava 1.7?

Kind regards,
Bart Mesuere



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