[Biojava-l] read DBLINK field from genbank file

[George Waldon]

Hi Bart,

DBLINK is a recent addition to Genbank format and unfortunately bj1  
parser does not read it. You can check yourself in  
org.biojavax.bio.seq.io.GenbankFormat.

Regards,
George

Quoting Bart Mesuere <bart.mesuere at ugent.be>:

> Hi,
>
> I'm trying to read some genbank files using the 1.7 legacy code. All works
> fine but I'm having trouble extracting the projectid located in the DBLINK
> field (in bold in the example):
>
> LOCUS       NC_009926             374161 bp    DNA     circular BCT
>> 25-JUL-2008
>> DEFINITION  Acaryochloris marina MBIC11017 plasmid pREB1, complete
>> sequence.
>> ACCESSION   NC_009926
>> VERSION     NC_009926.1  GI:158339488
>> *DBLINK      Project: 58167*
>
>
> I already inspected the SimpleRichSequence object with a debugger but
> couldn't find anything useful. Is it possible to read this field using
> biojava 1.7?
>
> Kind regards,
> Bart Mesuere
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