[Biojava-l] Biojava-l Digest, Vol 93, Issue 9

[sobia idrees]

Hi

I have developed some web based and desktop based applications using
biojava..Can it be published in Biojava journal?

Thanks,
Sobia Idrees

On Thu, Oct 21, 2010 at 7:28 PM, sobia idrees <sb.genny at gmail.com> wrote:

> Hi
>
> I want to develop phylogenetics application in biojava..but need help to do
> that..Kindly help me in developing some applications..
>
> Thanks in anticipation
>
> Regards,
> Sobia Idrees
>
>
> On Tue, Oct 19, 2010 at 9:00 PM, <biojava-l-request at lists.open-bio.org>wrote:
>
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>> Today's Topics:
>>
>>   1. feature request - full query description from blast       result
>>      (Hedwig Kurka)
>>
>>
>> ----------------------------------------------------------------------
>>
>> Message: 1
>> Date: Tue, 19 Oct 2010 13:25:31 +0200
>> From: Hedwig Kurka <kurka at mikro.biologie.tu-muenchen.de>
>> Subject: [Biojava-l] feature request - full query description from
>>        blast   result
>> To: biojava-l at lists.open-bio.org
>> Message-ID: <4CBD802B.7030809 at mikro.biologie.tu-muenchen.de>
>> Content-Type: text/plain; charset=ISO-8859-15
>>
>> Hi all,
>>
>> I just read in a blast file and I want to get the full query description.
>> For example, when I have that query:
>> Query= ||/locus_tag= CD0002 ||/gene=dnaN ||/product= DNA polymerase
>> III subunit beta ||/protein_id= YP_001086465.1 ||/transl_table=11
>> ||/db_xref=||/organism=Clostridium difficile 630 |feature_id=2
>>         (1208 letters)
>>
>> I get as query-information locus_tag= CD0002
>> The rest is truncated.
>>
>> In the biojava-mailinglist I found the same question
>> http://www.mail-archive.com/biojava-l@lists.open-bio.org/msg01022.html
>>
>> And Mark suggested to make a request for improvement, but as I see it,
>> nothing happened. So I would like to ask, if you can change it. Or is it
>> changed and I don't see it.
>>
>> Thanks,
>> Hedwig
>>
>>
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>>
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>>
>> End of Biojava-l Digest, Vol 93, Issue 9
>> ****************************************
>>
>
>